IL_8OI5_182
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OI5_182 not in the Motif Atlas
- Homologous match to IL_8P9A_266
- Geometric discrepancy: 0.0577
- The information below is about IL_8P9A_266
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8OI5|1|AS|G|987
8OI5|1|AS|A|988
8OI5|1|AS|G|989
8OI5|1|AS|G|990
8OI5|1|AS|U|991
8OI5|1|AS|A|992
8OI5|1|AS|A|993
*
8OI5|1|AS|U|1048
8OI5|1|AS|A|1049
8OI5|1|AS|A|1050
8OI5|1|AS|A|1051
8OI5|1|AS|U|1052
8OI5|1|AS|A|1053
8OI5|1|AS|U|1054
Current chains
- Chain AS
- 25S
Nearby chains
- Chain AT
- 5S ribosomal RNA; 5S rRNA
- Chain AZ
- Uncharacterized protein CaJ7.0206
- Chain BB
- 60S ribosomal protein L7-A
- Chain BE
- 60S ribosomal protein L10
- Chain BO
- 60S ribosomal protein L21-A
Coloring options: