IL_8OI5_190

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_190 not in the Motif Atlas

Homologous match to IL_8C3A_049

Geometric discrepancy: 0.0676

The information below is about IL_8C3A_049

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8OI5|1|AS|A|1116
8OI5|1|AS|U|1117
8OI5|1|AS|U|1118
*
8OI5|1|AS|A|1132
8OI5|1|AS|C|1133
8OI5|1|AS|U|1134

Current chains

Chain AS

25S

Nearby chains

Chain AT

5S ribosomal RNA; 5S rRNA

Chain BB

60S ribosomal protein L7-A

Chain BW

60S ribosomal protein L29