IL_8OI5_197

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8OI5|1|AS|U|1204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_197 not in the Motif Atlas

Homologous match to IL_8C3A_056

Geometric discrepancy: 0.0492

The information below is about IL_8C3A_056

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8OI5|1|AS|G|1203
8OI5|1|AS|U|1204
8OI5|1|AS|G|1205
*
8OI5|1|AS|C|1292
8OI5|1|AS|C|1293

Current chains

Chain AS

25S

Nearby chains

Chain AT

5S ribosomal RNA; 5S rRNA

Chain BD

60S ribosomal protein L9-B

Chain BN

60S ribosomal protein L20

Chain CH

60S ribosomal protein L40-B