3D structure

PDB id
8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CAG*CG
Length
5 nucleotides
Bulged bases
8OI5|1|AS|A|1382
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8OI5_200 not in the Motif Atlas
Homologous match to IL_8C3A_062
Geometric discrepancy: 0.0811
The information below is about IL_8C3A_062
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

8OI5|1|AS|C|1381
8OI5|1|AS|A|1382
8OI5|1|AS|G|1383
*
8OI5|1|AS|C|1416
8OI5|1|AS|G|1417

Current chains

Chain AS
25S

Nearby chains

Chain AU
5.8S ribosomal RNA; 5.8S rRNA
Chain AY
60S ribosomal protein L4-B
Chain BZ
60S ribosomal protein L32

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2773 s