IL_8OI5_220
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OI5_220 not in the Motif Atlas
- Geometric match to IL_8C3A_484
- Geometric discrepancy: 0.0425
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
8OI5|1|AS|G|1894
8OI5|1|AS|G|1895
8OI5|1|AS|A|1896
8OI5|1|AS|A|1897
8OI5|1|AS|G|1898
8OI5|1|AS|U|1899
8OI5|1|AS|C|1900
8OI5|1|AS|G|1901
8OI5|1|AS|G|1902
*
8OI5|1|AS|C|2311
8OI5|1|AS|U|2312
8OI5|1|AS|G|2313
8OI5|1|AS|U|2314
8OI5|1|AS|C|2315
Current chains
- Chain AS
- 25S
Nearby chains
- Chain AX
- 60S ribosomal protein L3
- Chain BQ
- 60S ribosomal protein L23-A
Coloring options: