IL_8OI5_238

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8OI5|1|AS|A|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_238 not in the Motif Atlas

Homologous match to IL_8C3A_099

Geometric discrepancy: 0.0479

The information below is about IL_8C3A_099

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8OI5|1|AS|G|2390
8OI5|1|AS|A|2391
*
8OI5|1|AS|U|2779
8OI5|1|AS|A|2780
8OI5|1|AS|C|2781
8OI5|1|AS|C|2782

Current chains

Chain AS

25S

Nearby chains

Chain AW

60S ribosomal protein L2-B