IL_8OI5_239

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8OI5|1|AS|G|2578

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_239 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.0555

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8OI5|1|AS|U|2401
8OI5|1|AS|A|2402
8OI5|1|AS|G|2403
*
8OI5|1|AS|U|2576
8OI5|1|AS|G|2577
8OI5|1|AS|G|2578
8OI5|1|AS|G|2579

Current chains

Chain AS

25S

Nearby chains

Chain AW

60S ribosomal protein L2-B

Chain BI

60S ribosomal protein L15-A

Chain CJ

60S ribosomal protein L42-B