IL_8OI5_241

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

8OI5|1|AS|A|2598

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_241 not in the Motif Atlas

Homologous match to IL_8C3A_107

Geometric discrepancy: 0.0262

The information below is about IL_8C3A_107

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8OI5|1|AS|G|2586
8OI5|1|AS|G|2587
*
8OI5|1|AS|C|2597
8OI5|1|AS|A|2598
8OI5|1|AS|C|2599

Current chains

Chain AS

25S

Nearby chains

Chain BE

60S ribosomal protein L10

Chain BO

60S ribosomal protein L21-A

Chain BW

60S ribosomal protein L29

Chain CJ

60S ribosomal protein L42-B