IL_8OI5_244

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUCC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_244 not in the Motif Atlas

Homologous match to IL_8C3A_110

Geometric discrepancy: 0.0782

The information below is about IL_8C3A_110

Detailed Annotation

Single stack bend with bulge

Broad Annotation

Single stack bend with bulge

Motif group

IL_39137.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8OI5|1|AS|G|2742
8OI5|1|AS|U|2743
8OI5|1|AS|C|2744
8OI5|1|AS|C|2745
*
8OI5|1|AS|G|2759
8OI5|1|AS|C|2760

Current chains

Chain AS

25S

Nearby chains

Chain BG

60S ribosomal protein L13

Chain BL

60S ribosomal protein L18-A

Chain BV

60S ribosomal protein L28

Chain CJ

60S ribosomal protein L42-B