IL_8OI5_248

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_248 not in the Motif Atlas

Homologous match to IL_8P9A_333

Geometric discrepancy: 0.0676

The information below is about IL_8P9A_333

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8OI5|1|AS|U|2807
8OI5|1|AS|C|2808
8OI5|1|AS|A|2809
8OI5|1|AS|A|2810
8OI5|1|AS|G|2811
*
8OI5|1|AS|C|2821
8OI5|1|AS|G|2822
8OI5|1|AS|A|2823
8OI5|1|AS|C|2824
8OI5|1|AS|A|2825

Current chains

Chain AS

25S

Nearby chains

Chain BE

60S ribosomal protein L10

Chain CH

60S ribosomal protein L40-B