IL_8OI5_262

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

8OI5|1|AS|A|3050, 8OI5|1|AS|C|3051

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_262 not in the Motif Atlas

Homologous match to IL_8C3A_128

Geometric discrepancy: 0.0534

The information below is about IL_8C3A_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8OI5|1|AS|C|3035
8OI5|1|AS|U|3036
*
8OI5|1|AS|A|3049
8OI5|1|AS|A|3050
8OI5|1|AS|C|3051
8OI5|1|AS|G|3052

Current chains

Chain AS

25S

Nearby chains

Chain BM

60S ribosomal protein L19-A

Chain BY

60S ribosomal protein L31-B