IL_8OI5_271

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CG*UUG

Length

5 nucleotides

Bulged bases

8OI5|1|AS|U|3347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_271 not in the Motif Atlas

Homologous match to IL_8P9A_358

Geometric discrepancy: 0.2997

The information below is about IL_8P9A_358

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8OI5|1|AS|C|3289
8OI5|1|AS|G|3290
*
8OI5|1|AS|U|3346
8OI5|1|AS|U|3347
8OI5|1|AS|G|3348

Current chains

Chain AS

25S

Nearby chains

Chain AX

60S ribosomal protein L3

Chain BY

60S ribosomal protein L31-B