IL_8OI5_277

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

8OI5|1|AT|A|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_277 not in the Motif Atlas

Homologous match to IL_8C3A_143

Geometric discrepancy: 0.0641

The information below is about IL_8C3A_143

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

8OI5|1|AT|C|15
8OI5|1|AT|U|16
*
8OI5|1|AT|A|63
8OI5|1|AT|A|64
8OI5|1|AT|G|65

Current chains

Chain AT

5S

Nearby chains

Chain AS

Large subunit ribosomal RNA; LSU rRNA

Chain AZ

Uncharacterized protein CaJ7.0206

Chain BE

60S ribosomal protein L10

Chain BF

60S ribosomal protein L11-B