IL_8OI5_319

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8OI5|1|B|A|617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_319 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.0551

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8OI5|1|B|G|614
8OI5|1|B|U|615
8OI5|1|B|U|616
8OI5|1|B|A|617
8OI5|1|B|A|618
8OI5|1|B|A|619
8OI5|1|B|A|620
*
8OI5|1|B|U|1089
8OI5|1|B|C|1090

Current chains

Chain B

18S

Nearby chains

Chain Z

Ribosomal protein S23 (S12)

Chain c

40S ribosomal protein S26