IL_8OI5_334

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_334 not in the Motif Atlas

Homologous match to IL_8C3A_442

Geometric discrepancy: 0.0629

The information below is about IL_8C3A_442

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.5

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8OI5|1|B|C|975
8OI5|1|B|G|976
8OI5|1|B|A|977
8OI5|1|B|A|978
8OI5|1|B|G|979
*
8OI5|1|B|C|995
8OI5|1|B|G|996
8OI5|1|B|U|997
8OI5|1|B|A|998
8OI5|1|B|G|999

Current chains

Chain B

18S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain Q

40S ribosomal protein S14-A

Chain c

40S ribosomal protein S26

Chain j

60S ribosomal protein L2-B