IL_8OI5_337
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGU*ACG
- Length
- 7 nucleotides
- Bulged bases
- 8OI5|1|B|G|1038
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OI5_337 not in the Motif Atlas
- Homologous match to IL_8C3A_504
- Geometric discrepancy: 0.1063
- The information below is about IL_8C3A_504
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_26569.1
- Basepair signature
- cWW-R-cHW-L
- Number of instances in this motif group
- 1
Unit IDs
8OI5|1|B|U|1036
8OI5|1|B|U|1037
8OI5|1|B|G|1038
8OI5|1|B|U|1039
*
8OI5|1|B|A|1050
8OI5|1|B|C|1051
8OI5|1|B|G|1052
Current chains
- Chain B
- 18S
Nearby chains
- Chain C
- 40S ribosomal protein S0
- Chain D
- 40S ribosomal protein S1
- Chain T
- 40S ribosomal protein S17-B
- Chain d
- 40S ribosomal protein S27
Coloring options: