IL_8OI5_358
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OI5_358 not in the Motif Atlas
- Homologous match to IL_8C3A_466
- Geometric discrepancy: 0.0554
- The information below is about IL_8C3A_466
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48143.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OI5|1|B|G|1466
8OI5|1|B|C|1467
8OI5|1|B|C|1468
8OI5|1|B|A|1469
8OI5|1|B|G|1470
8OI5|1|B|C|1471
8OI5|1|B|G|1472
8OI5|1|B|A|1473
*
8OI5|1|B|U|1506
8OI5|1|B|U|1507
8OI5|1|B|G|1508
8OI5|1|B|U|1509
8OI5|1|B|G|1510
8OI5|1|B|A|1511
8OI5|1|B|A|1512
8OI5|1|B|A|1513
8OI5|1|B|C|1514
Current chains
- Chain B
- 18S
Nearby chains
- Chain F
- Ribosomal protein S3
- Chain H
- Ribosomal protein S7
- Chain S
- 40S ribosomal protein S16
- Chain V
- 40S ribosomal protein S19-A
- Chain W
- Ribosomal protein S10
- Chain f
- 40S ribosomal protein S29A
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