IL_8OI5_365

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_365 not in the Motif Atlas

Geometric match to IL_2O3V_002

Geometric discrepancy: 0.3946

The information below is about IL_2O3V_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

8OI5|1|B|C|1631
8OI5|1|B|G|1632
8OI5|1|B|C|1633
8OI5|1|B|U|1634
*
8OI5|1|B|A|1740
8OI5|1|B|A|1741
8OI5|1|B|A|1742
8OI5|1|B|A|1743
8OI5|1|B|G|1744

Current chains

Chain B

18S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AO

60S ribosomal protein L41

Chain Z

Ribosomal protein S23 (S12)

Chain g

40S ribosomal protein S30

Chain i

60S ribosomal protein CAALFM_C304810CA