IL_8OI5_368

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

8OI5|1|B|U|1644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_368 not in the Motif Atlas

Homologous match to IL_8P9A_458

Geometric discrepancy: 0.1061

The information below is about IL_8P9A_458

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8OI5|1|B|U|1643
8OI5|1|B|U|1644
8OI5|1|B|G|1645
*
8OI5|1|B|U|1730
8OI5|1|B|A|1731

Current chains

Chain B

18S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 6

60S ribosomal protein L23-A

Chain AO

60S ribosomal protein L41

Chain Z

Ribosomal protein S23 (S12)