IL_8OI5_381

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

8OI5|1|CM|C|114, 8OI5|1|CM|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_381 not in the Motif Atlas

Homologous match to IL_8C3A_400

Geometric discrepancy: 0.0538

The information below is about IL_8C3A_400

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8OI5|1|CM|U|113
8OI5|1|CM|C|114
8OI5|1|CM|G|115
8OI5|1|CM|U|116
*
8OI5|1|CM|A|298
8OI5|1|CM|A|299

Current chains

Chain CM

18S

Nearby chains

Chain CR

40S ribosomal protein S4

Chain CV

40S ribosomal protein S8

Chain CY

40S ribosomal protein S11A