IL_8OI5_393

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

8OI5|1|CM|U|378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_393 not in the Motif Atlas

Homologous match to IL_8C3A_412

Geometric discrepancy: 0.0483

The information below is about IL_8C3A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49054.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8OI5|1|CM|G|361
8OI5|1|CM|G|362
8OI5|1|CM|G|363
*
8OI5|1|CM|C|374
8OI5|1|CM|G|375
8OI5|1|CM|A|376
8OI5|1|CM|U|377
8OI5|1|CM|U|378
8OI5|1|CM|C|379

Current chains

Chain CM

18S

Nearby chains

Chain CR

40S ribosomal protein S4

Chain CW

Ribosomal protein S4

Chain DK

Ribosomal protein S23 (S12)