IL_8OI5_421
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OI5_421 not in the Motif Atlas
- Homologous match to IL_8C3A_442
- Geometric discrepancy: 0.0549
- The information below is about IL_8C3A_442
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.5
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8OI5|1|CM|C|975
8OI5|1|CM|G|976
8OI5|1|CM|A|977
8OI5|1|CM|A|978
8OI5|1|CM|G|979
*
8OI5|1|CM|C|995
8OI5|1|CM|G|996
8OI5|1|CM|U|997
8OI5|1|CM|A|998
8OI5|1|CM|G|999
Current chains
- Chain CM
- 18S
Nearby chains
- Chain AS
- Large subunit ribosomal RNA; LSU rRNA
- Chain AW
- 60S ribosomal protein L2-B
- Chain DB
- 40S ribosomal protein S14-A
- Chain DN
- 40S ribosomal protein S26
Coloring options: