IL_8OI5_461

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

8OI5|1|AS|U|1816, 8OI5|1|AS|U|1817

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_461 not in the Motif Atlas

Homologous match to IL_8CRE_070

Geometric discrepancy: 0.1503

The information below is about IL_8CRE_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

8OI5|1|AS|G|1619
8OI5|1|AS|G|1620
*
8OI5|1|AS|U|1815
8OI5|1|AS|U|1816
8OI5|1|AS|U|1817
8OI5|1|AS|C|1818

Current chains

Chain AS

25S

Nearby chains

Chain CB

60S ribosomal protein L34-B