IL_8OI5_462
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 8OI5|1|AS|U|1712, 8OI5|1|AS|A|1725
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OI5_462 not in the Motif Atlas
- Homologous match to IL_8CRE_078
- Geometric discrepancy: 0.0855
- The information below is about IL_8CRE_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69543.3
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8OI5|1|AS|U|1707
8OI5|1|AS|G|1708
8OI5|1|AS|G|1709
8OI5|1|AS|A|1710
8OI5|1|AS|A|1711
8OI5|1|AS|U|1712
8OI5|1|AS|U|1713
*
8OI5|1|AS|G|1723
8OI5|1|AS|G|1724
8OI5|1|AS|A|1725
8OI5|1|AS|G|1726
8OI5|1|AS|A|1727
8OI5|1|AS|U|1728
8OI5|1|AS|G|1729
Current chains
- Chain AS
- 25S
Nearby chains
- Chain BM
- 60S ribosomal protein L19-A
- Chain BU
- 60S ribosomal protein L27
- Chain BX
- 60S ribosomal protein L30
- Chain CK
- 60S ribosomal protein L43-A
- Chain DA
- 40S ribosomal protein S13
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