IL_8OIN_010

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAA*UAA

Length

7 nucleotides

Bulged bases

8OIN|1|AA|U|187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_010 not in the Motif Atlas

Geometric match to IL_5TBW_042

Geometric discrepancy: 0.2045

The information below is about IL_5TBW_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8OIN|1|AA|U|186
8OIN|1|AA|U|187
8OIN|1|AA|A|188
8OIN|1|AA|A|189
*
8OIN|1|AA|U|210
8OIN|1|AA|A|211
8OIN|1|AA|A|212

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AT

Mitochondrial ribosomal protein S25