3D structure

PDB id
8OIN (explore in PDB, NAKB, or RNA 3D Hub)
Description
55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
UAAAUUAU*AAAAUAAA
Length
16 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8OIN|1|AA|U|327
8OIN|1|AA|A|328
8OIN|1|AA|A|329
8OIN|1|AA|A|330
8OIN|1|AA|U|331
8OIN|1|AA|U|332
8OIN|1|AA|A|333
8OIN|1|AA|U|334
*
8OIN|1|AA|A|360
8OIN|1|AA|A|361
8OIN|1|AA|A|362
8OIN|1|AA|A|363
8OIN|1|AA|U|364
8OIN|1|AA|A|365
8OIN|1|AA|A|366
8OIN|1|AA|A|367

Current chains

Chain AA
12S rRNA

Nearby chains

Chain AE
Mitoribosomal protein bs6m, mrps6
Chain AP
Mitochondrial ribosomal protein S18C
Chain AQ
28S ribosomal protein S21, mitochondrial
Chain Ai
Mitochondrial ribosomal protein S11

Coloring options:

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