IL_8OIN_027
3D structure
- PDB id
- 8OIN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCU*AG
- Length
- 5 nucleotides
- Bulged bases
- 8OIN|1|AA|C|609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIN_027 not in the Motif Atlas
- Homologous match to IL_4LFB_042
- Geometric discrepancy: 0.2028
- The information below is about IL_4LFB_042
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 147
Unit IDs
8OIN|1|AA|C|608
8OIN|1|AA|C|609
8OIN|1|AA|U|610
*
8OIN|1|AA|A|693
8OIN|1|AA|G|694
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AK
- Mitochondrial ribosomal protein S14
- Chain AZ
- Mitochondrial ribosomal protein S33
- Chain Aa
- Peptide chain release factor 1, mitochondrial
- Chain Ad
- 28S ribosomal protein S5, mitochondrial isoform X2
Coloring options: