IL_8OIN_043

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUA,UAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_043 not in the Motif Atlas

Geometric match to IL_1ZH5_001

Geometric discrepancy: 0.1682

The information below is about IL_1ZH5_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8OIN|1|AG|G|2
8OIN|1|AG|U|3
8OIN|1|AG|A|4
*
8OIN|1|AG|U|64
8OIN|1|AG|A|65
8OIN|1|AG|C|66

Current chains

Chain AG

P-site Met-tRNA(fMet)

Nearby chains

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain B8

Large subunit ribosomal RNA; LSU rRNA

Chain BD

Mitochondrial ribosomal protein L27

Chain BU

uL16m