IL_8OIN_060

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

8OIN|1|B8|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_060 not in the Motif Atlas

Geometric match to IL_5J7L_261

Geometric discrepancy: 0.1394

The information below is about IL_5J7L_261

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8OIN|1|B8|G|265
8OIN|1|B8|C|266
*
8OIN|1|B8|G|310
8OIN|1|B8|A|311
8OIN|1|B8|C|312

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BL

uL2m