IL_8OIN_067

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

8OIN|1|B8|A|532

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_067 not in the Motif Atlas

Homologous match to IL_6PRV_002

Geometric discrepancy: 0.2992

The information below is about IL_6PRV_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIN|1|B8|G|531
8OIN|1|B8|A|532
8OIN|1|B8|A|533
8OIN|1|B8|A|534
*
8OIN|1|B8|U|545
8OIN|1|B8|C|546

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BQ

Mitochondrial ribosomal protein L11

Chain Bb

Mitochondrial ribosomal protein L53

Chain Bc

mL54

Chain Bl

Ribosomal protein