IL_8OIN_081

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GC*GUAU

Length

6 nucleotides

Bulged bases

8OIN|1|B8|U|960, 8OIN|1|B8|A|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_081 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.232

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8OIN|1|B8|G|928
8OIN|1|B8|C|929
*
8OIN|1|B8|G|959
8OIN|1|B8|U|960
8OIN|1|B8|A|961
8OIN|1|B8|U|962

Current chains

Chain B8

16S rRNA

Nearby chains

Chain AD

Aurora kinase A interacting protein 1

Chain AG

P-site Met-tRNA(fMet)