IL_8OIN_082

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUAAUCACUUG*CUUG

Length

16 nucleotides

Bulged bases

8OIN|1|B8|A|933, 8OIN|1|B8|U|939, 8OIN|1|B8|U|958

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIN|1|B8|C|929
8OIN|1|B8|A|930
8OIN|1|B8|U|931
8OIN|1|B8|A|932
8OIN|1|B8|A|933
8OIN|1|B8|U|934
8OIN|1|B8|C|935
8OIN|1|B8|A|936
8OIN|1|B8|C|937
8OIN|1|B8|U|938
8OIN|1|B8|U|939
8OIN|1|B8|G|940
*
8OIN|1|B8|C|956
8OIN|1|B8|U|957
8OIN|1|B8|U|958
8OIN|1|B8|G|959

Current chains

Chain B8

16S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AD

Aurora kinase A interacting protein 1

Chain AG

P-site Met-tRNA(fMet)

Chain Aa

Peptide chain release factor 1, mitochondrial