IL_8OIN_085

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUA*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUA,UAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_085 not in the Motif Atlas

Geometric match to IL_4V9F_017

Geometric discrepancy: 0.1677

The information below is about IL_4V9F_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8OIN|1|B8|C|1060
8OIN|1|B8|U|1061
8OIN|1|B8|A|1062
*
8OIN|1|B8|U|1266
8OIN|1|B8|A|1267
8OIN|1|B8|G|1268

Current chains

Chain B8

16S rRNA

Nearby chains

Chain AG

P-site Met-tRNA(fMet)

Chain BN

Mitochondrial ribosomal protein L4

Chain BT

39S ribosomal protein L15, mitochondrial

Chain Bu

Mitochondrial ribosomal protein L45