IL_8OIN_088

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAAC*GCAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_088 not in the Motif Atlas

Geometric match to IL_8CRE_467

Geometric discrepancy: 0.3957

The information below is about IL_8CRE_467

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8OIN|1|B8|U|1074
8OIN|1|B8|U|1075
8OIN|1|B8|A|1076
8OIN|1|B8|A|1077
8OIN|1|B8|C|1078
*
8OIN|1|B8|G|1138
8OIN|1|B8|C|1139
8OIN|1|B8|A|1140
8OIN|1|B8|A|1141

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BE

Mitochondrial ribosomal protein L28