IL_8OIN_089

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_089 not in the Motif Atlas

Homologous match to IL_4WF9_083

Geometric discrepancy: 0.2052

The information below is about IL_4WF9_083

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8OIN|1|B8|A|1080
8OIN|1|B8|U|1081
8OIN|1|B8|U|1082
*
8OIN|1|B8|A|1134
8OIN|1|B8|C|1135
8OIN|1|B8|U|1136

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BE

Mitochondrial ribosomal protein L28

Chain BO

Mitochondrial ribosomal protein L9