IL_8OIN_106

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_106 not in the Motif Atlas

Geometric match to IL_6IA2_005

Geometric discrepancy: 0.2016

The information below is about IL_6IA2_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8OIN|1|B8|C|1487
8OIN|1|B8|C|1488
8OIN|1|B8|U|1489
*
8OIN|1|B8|A|1495
8OIN|1|B8|C|1496
8OIN|1|B8|G|1497

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BM

ICT1

Chain BS

Mitochondrial ribosomal protein L14

Chain BV

bL17m

Chain BX

39S ribosomal protein L19, mitochondrial