IL_8OIN_117

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_117 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.2704

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8OIN|1|AA|C|860
8OIN|1|AA|A|861
8OIN|1|AA|A|862
8OIN|1|AA|G|863
*
8OIN|1|AA|C|907
8OIN|1|AA|A|908
8OIN|1|AA|A|909
8OIN|1|AA|G|910

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

Aurora kinase A interacting protein 1

Chain B8

Large subunit ribosomal RNA; LSU rRNA