IL_8OIN_119

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_119 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1191

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

8OIN|1|B8|G|801
8OIN|1|B8|G|802
8OIN|1|B8|A|803
8OIN|1|B8|A|804
8OIN|1|B8|C|805
8OIN|1|B8|U|806
8OIN|1|B8|C|807
8OIN|1|B8|G|808
8OIN|1|B8|G|809
*
8OIN|1|B8|C|985
8OIN|1|B8|U|986
8OIN|1|B8|G|987
8OIN|1|B8|U|988
8OIN|1|B8|C|989

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BM

ICT1

Chain BS

Mitochondrial ribosomal protein L14

Chain BX

39S ribosomal protein L19, mitochondrial