IL_8OIN_123

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAG*CUACG

Length

8 nucleotides

Bulged bases

8OIN|1|B8|A|1395, 8OIN|1|B8|C|1396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_123 not in the Motif Atlas

Geometric match to IL_7VFT_001

Geometric discrepancy: 0.3096

The information below is about IL_7VFT_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8OIN|1|B8|C|1335
8OIN|1|B8|A|1336
8OIN|1|B8|G|1337
*
8OIN|1|B8|C|1393
8OIN|1|B8|U|1394
8OIN|1|B8|A|1395
8OIN|1|B8|C|1396
8OIN|1|B8|G|1397

Current chains

Chain B8

16S rRNA

Nearby chains

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain BM

ICT1

Chain BR

39S ribosomal protein L13, mitochondrial