IL_8OIP_008

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCAC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIP_008 not in the Motif Atlas

Geometric match to IL_3DIL_004

Geometric discrepancy: 0.2225

The information below is about IL_3DIL_004

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

8OIP|1|AA|G|116
8OIP|1|AA|C|117
8OIP|1|AA|A|118
8OIP|1|AA|C|119
*
8OIP|1|AA|G|133
8OIP|1|AA|C|134

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

Aurora kinase A interacting protein 1

Chain AL

28S ribosomal protein S15, mitochondrial

Chain AN

uS17m