IL_8OIP_021

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAACU*ACUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIP_021 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.2

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8OIP|1|AA|A|419
8OIP|1|AA|A|420
8OIP|1|AA|A|421
8OIP|1|AA|C|422
8OIP|1|AA|U|423
*
8OIP|1|AA|A|439
8OIP|1|AA|C|440
8OIP|1|AA|U|441
8OIP|1|AA|A|442
8OIP|1|AA|U|443

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AQ

28S ribosomal protein S21, mitochondrial

Chain Ai

Mitochondrial ribosomal protein S11