IL_8OIP_022

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUACUACUCG*CCUAAAAC

Length

18 nucleotides

Bulged bases

8OIP|1|AA|C|494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIP_022 not in the Motif Atlas

Geometric match to IL_6UFH_002

Geometric discrepancy: 0.3888

The information below is about IL_6UFH_002

Detailed Annotation

10x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_22278.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8OIP|1|AA|G|491
8OIP|1|AA|U|492
8OIP|1|AA|A|493
8OIP|1|AA|C|494
8OIP|1|AA|U|495
8OIP|1|AA|A|496
8OIP|1|AA|C|497
8OIP|1|AA|U|498
8OIP|1|AA|C|499
8OIP|1|AA|G|500
*
8OIP|1|AA|C|507
8OIP|1|AA|C|508
8OIP|1|AA|U|509
8OIP|1|AA|A|510
8OIP|1|AA|A|511
8OIP|1|AA|A|512
8OIP|1|AA|A|513
8OIP|1|AA|C|514

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

Aurora kinase A interacting protein 1

Chain AJ

Mitochondrial ribosomal protein S12

Chain AL

28S ribosomal protein S15, mitochondrial