IL_8OIP_027
3D structure
- PDB id
- 8OIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAUAC*GUG
- Length
- 8 nucleotides
- Bulged bases
- 8OIP|1|AA|U|614
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIP_027 not in the Motif Atlas
- Homologous match to IL_4LFB_044
- Geometric discrepancy: 0.1903
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8OIP|1|AA|U|612
8OIP|1|AA|A|613
8OIP|1|AA|U|614
8OIP|1|AA|A|615
8OIP|1|AA|C|616
*
8OIP|1|AA|G|689
8OIP|1|AA|U|690
8OIP|1|AA|G|691
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AH
- Mitochondrial ribosomal protein S10
- Chain AI
- mRNA
- Chain AK
- Mitochondrial ribosomal protein S14
- Chain AZ
- Mitochondrial ribosomal protein S33
- Chain Aa
- Peptide chain release factor 1, mitochondrial
- Chain Ad
- 28S ribosomal protein S5, mitochondrial isoform X2
Coloring options: