IL_8OIP_028
3D structure
- PDB id
- 8OIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CG*UCAAG
- Length
- 7 nucleotides
- Bulged bases
- 8OIP|1|AA|C|685, 8OIP|1|AA|A|686
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIP_028 not in the Motif Atlas
- Homologous match to IL_6CZR_155
- Geometric discrepancy: 0.2872
- The information below is about IL_6CZR_155
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_95583.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
8OIP|1|AA|C|617
8OIP|1|AA|G|618
*
8OIP|1|AA|U|684
8OIP|1|AA|C|685
8OIP|1|AA|A|686
8OIP|1|AA|A|687
8OIP|1|AA|G|688
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AC
- Mitochondrial ribosomal protein S24
- Chain AH
- Mitochondrial ribosomal protein S10
- Chain AK
- Mitochondrial ribosomal protein S14
- Chain Aa
- Peptide chain release factor 1, mitochondrial
- Chain Ad
- 28S ribosomal protein S5, mitochondrial isoform X2
Coloring options: