IL_8OIP_032
3D structure
- PDB id
- 8OIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CC*GAACAAUAG
- Length
- 11 nucleotides
- Bulged bases
- 8OIP|1|AA|A|647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIP_032 not in the Motif Atlas
- Geometric match to IL_1R3E_001
- Geometric discrepancy: 0.2443
- The information below is about IL_1R3E_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_05670.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
8OIP|1|AA|C|633
8OIP|1|AA|C|634
*
8OIP|1|AA|G|643
8OIP|1|AA|A|644
8OIP|1|AA|A|645
8OIP|1|AA|C|646
8OIP|1|AA|A|647
8OIP|1|AA|A|648
8OIP|1|AA|U|649
8OIP|1|AA|A|650
8OIP|1|AA|G|651
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AQ
- 28S ribosomal protein S21, mitochondrial
- Chain AS
- mS23
- Chain Ab
- Mitochondrial ribosomal protein S2
- Chain Ac
- Coiled-coil-helix-coiled-coil-helix domain containing 1
- Chain Ad
- 28S ribosomal protein S5, mitochondrial isoform X2
- Chain Ag
- uS9m
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