IL_8OIP_045

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUG*CAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIP_045 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.2996

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8OIP|1|AA|C|48
8OIP|1|AA|A|49
8OIP|1|AA|U|50
8OIP|1|AA|G|51
*
8OIP|1|AA|C|174
8OIP|1|AA|A|175
8OIP|1|AA|G|176

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AU

Mitochondrial ribosomal protein S26