IL_8OIP_053

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

G(B8T)C(5MC)*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8T, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIP_053 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.1521

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8OIP|1|AA|G|845
8OIP|1|AA|B8T|846
8OIP|1|AA|C|847
8OIP|1|AA|5MC|848
*
8OIP|1|AA|G|923
8OIP|1|AA|U|924
8OIP|1|AA|A|925
8OIP|1|AA|A|926
8OIP|1|AA|C|927

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

Aurora kinase A interacting protein 1

Chain AG

P-site Met-tRNA(fMet)

Chain AI

mRNA

Chain Aa

Peptide chain release factor 1, mitochondrial