IL_8OIQ_009
3D structure
- PDB id
- 8OIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AAAGUAU*AGAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIQ_009 not in the Motif Atlas
- Geometric match to IL_5J7L_251
- Geometric discrepancy: 0.1476
- The information below is about IL_5J7L_251
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8OIQ|1|B8|A|73
8OIQ|1|B8|A|74
8OIQ|1|B8|A|75
8OIQ|1|B8|G|76
8OIQ|1|B8|U|77
8OIQ|1|B8|A|78
8OIQ|1|B8|U|79
*
8OIQ|1|B8|A|87
8OIQ|1|B8|G|88
8OIQ|1|B8|A|89
8OIQ|1|B8|A|90
8OIQ|1|B8|A|91
8OIQ|1|B8|U|92
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain BE
- Mitochondrial ribosomal protein L28
- Chain BK
- 39S ribosomal protein L35, mitochondrial
- Chain BO
- Mitochondrial ribosomal protein L9
- Chain BT
- 39S ribosomal protein L15, mitochondrial
- Chain Bg
- mL64
- Chain Bz
- Mitochondrial ribosomal protein L51
Coloring options: