IL_8OIQ_015

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

8OIQ|1|B8|G|348, 8OIQ|1|B8|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIQ_015 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1602

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8OIQ|1|B8|G|242
8OIQ|1|B8|A|243
8OIQ|1|B8|A|244
8OIQ|1|B8|A|245
8OIQ|1|B8|C|246
*
8OIQ|1|B8|G|346
8OIQ|1|B8|U|347
8OIQ|1|B8|G|348
8OIQ|1|B8|A|349
8OIQ|1|B8|U|350
8OIQ|1|B8|A|351
8OIQ|1|B8|G|352
8OIQ|1|B8|C|353

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BN

Mitochondrial ribosomal protein L4

Chain BT

39S ribosomal protein L15, mitochondrial

Chain Bz

Mitochondrial ribosomal protein L51