IL_8OIQ_017

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCA*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIQ_017 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1415

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8OIQ|1|B8|C|259
8OIQ|1|B8|C|260
8OIQ|1|B8|A|261
*
8OIQ|1|B8|U|316
8OIQ|1|B8|A|317
8OIQ|1|B8|G|318

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BJ

Mitochondrial ribosomal protein L34

Chain BL

Mitochondrial ribosomal protein L2

Chain Bq

Mitochondrial ribosomal protein L41